checkin

author: Nicholas Noll <nbnoll@eml.cc> 2021-09-09 09:09:19 -0700
committer: Nicholas Noll <nbnoll@eml.cc> 2021-09-09 09:09:19 -0700
commit: d73b9ad6094d37864f7859871c4fdf705d9fa60c (patch)
tree: 93e8b8e25dbaa7b0b81ef0c264134c16cf23ce4f
parent: 39f710dfb2010c4df0c14f5079173562071d6a65 (diff)
23 files changed, 230 insertions, 384 deletions
diff --git a/.config/alacritty/alacritty.yml b/.config/alacritty/alacritty.yml
deleted file mode 100644
index 64924ca..0000000
--- a/.config/alacritty/alacritty.yml
+++ /dev/null
@@ -1,268 +0,0 @@
-env:
-  TERM: alacritty
-window:
-  dimensions:
-    columns: 100
-    lines: 30
-  padding:
-    x: 2
-    y: 2
-  decorations: none
-
-scrolling:
-  history: 10000
-
-  # Number of lines the viewport will move for every line
-  # scrolled when scrollback is enabled (history > 0).
-  multiplier: 3
-
-draw_bold_text_with_bright_colors: true
-
-font:
-  normal:
-    family: consolas
-  bold:
-    family: consolas
-  italic:
-    family: consolas
-  bold-italic:
-    family: consolas
-  size: 12.0
-
-  # Offset is the extra space around each character. offset.y can be thought of
-  # as modifying the linespacing, and offset.x as modifying the letter spacing.
-  offset:
-    x: 0
-    y: 0
-
-  # Glyph offset determines the locations of the glyphs within their cells with
-  # the default being at the bottom. Increase the x offset to move the glyph to
-  # the right, increase the y offset to move the glyph upward.
-  glyph_offset:
-    x: 0
-    y: 0
-
-# Colors (Seoul256)
-colors:
-  # Default colors
-  primary:
-    background: '#3a3a3a'
-    foreground: '#d0d0d0'
-
-  # Normal colors
-  normal:
-    black:   '#4e4e4e'
-    red:     '#d68787'
-    green:   '#5f865f'
-    yellow:  '#d8af5f'
-    blue:    '#85add4'
-    magenta: '#d7afaf'
-    cyan:    '#87afaf'
-    white:   '#d0d0d0'
-
-  # Bright colors
-  bright:
-    black:   '#626262'
-    red:     '#d75f87'
-    green:   '#87af87'
-    yellow:  '#ffd787'
-    blue:    '#add4fb'
-    magenta: '#ffafaf'
-    cyan:    '#87d7d7'
-    white:   '#e4e4e4'
-
-visual_bell:
-  animation: EaseOutExpo
-  duration: 0 # disabled
-
-background_opacity: 0.9
-
-# Mouse bindings
-#
-# Currently doesn't support modifiers. Both the `mouse` and `action` fields must
-# be specified.
-#
-# Values for `mouse`:
-# - Middle
-# - Left
-# - Right
-# - Numeric identifier such as `5`
-#
-# Values for `action`:
-# - Paste
-# - PasteSelection
-# - Copy (TODO)
-mouse_bindings:
-  - { mouse: Middle, action: PasteSelection }
-
-mouse:
-  double_click: { threshold: 300 }
-  triple_click: { threshold: 300 }
-
-  url:
-    launcher: xdg-open
-    modifiers: Control
-
-selection:
-  semantic_escape_chars: ",│`|:\"' ()[]{}<>"
-
-dynamic_title: true
-
-live_config_reload: true
-
-# Key bindings
-#
-# Each binding is defined as an object with some properties. Most of the
-# properties are optional. All of the alphabetical keys should have a letter for
-# the `key` value such as `V`. Function keys are probably what you would expect
-# as well (F1, F2, ..). The number keys above the main keyboard are encoded as
-# `Key1`, `Key2`, etc. Keys on the number pad are encoded `Number1`, `Number2`,
-# etc.  These all match the glutin::VirtualKeyCode variants.
-#
-# A list with all available `key` names can be found here:
-# https://docs.rs/glutin/*/glutin/enum.VirtualKeyCode.html#variants
-#
-# Possible values for `mods`
-# `Command`, `Super` refer to the super/command/windows key
-# `Control` for the control key
-# `Shift` for the Shift key
-# `Alt` and `Option` refer to alt/option
-#
-# mods may be combined with a `|`. For example, requiring control and shift
-# looks like:
-#
-# mods: Control|Shift
-#
-# The parser is currently quite sensitive to whitespace and capitalization -
-# capitalization must match exactly, and piped items must not have whitespace
-# around them.
-#
-# Either an `action`, `chars`, or `command` field must be present.
-#   `action` must be one of the following:
-#       - `Paste`
-#       - `PasteSelection`
-#       - `Copy`
-#       - `IncreaseFontSize`
-#       - `DecreaseFontSize`
-#       - `ResetFontSize`
-#       - `ScrollPageUp`
-#       - `ScrollPageDown`
-#       - `ScrollToTop`
-#       - `ScrollToBottom`
-#       - `Quit`
-#   `chars` writes the specified string every time that binding is activated.
-#     These should generally be escape sequences, but they can be configured to
-#     send arbitrary strings of bytes.
-#   `command` must be a map containing a `program` string, and `args` array of
-#     strings. For example:
-#     - { ... , command: { program: "alacritty", args: ["-e", "vttest"] } }
-#
-# Want to add a binding (e.g. "PageUp") but are unsure what the X sequence
-# (e.g. "\x1b[5~") is? Open another terminal (like xterm) without tmux,
-# then run `showkey -a` to get the sequence associated to a key combination.
-key_bindings:
-  - { key: V,        mods: Control|Shift,    action: Paste               }
-  - { key: C,        mods: Control|Shift,    action: Copy                }
-  - { key: Paste,                   action: Paste                        }
-  - { key: Copy,                    action: Copy                         }
-  - { key: Q,        mods: Command, action: Quit                         }
-  - { key: W,        mods: Command, action: Quit                         }
-  - { key: Insert,   mods: Shift,   action: PasteSelection               }
-  - { key: Key0,     mods: Control, action: ResetFontSize                }
-  - { key: Equals,   mods: Control, action: IncreaseFontSize             }
-  - { key: Subtract, mods: Control, action: DecreaseFontSize             }
-  - { key: Home,                    chars: "\x1bOH",   mode: AppCursor   }
-  - { key: Home,                    chars: "\x1b[H",   mode: ~AppCursor  }
-  - { key: End,                     chars: "\x1bOF",   mode: AppCursor   }
-  - { key: End,                     chars: "\x1b[F",   mode: ~AppCursor  }
-  - { key: PageUp,   mods: Shift,   chars: "\x1b[5;2~"                   }
-  - { key: PageUp,   mods: Control, chars: "\x1b[5;5~"                   }
-  - { key: PageUp,                  chars: "\x1b[5~"                     }
-  - { key: PageDown, mods: Shift,   chars: "\x1b[6;2~"                   }
-  - { key: PageDown, mods: Control, chars: "\x1b[6;5~"                   }
-  - { key: PageDown,                chars: "\x1b[6~"                     }
-  - { key: Tab,      mods: Shift,   chars: "\x1b[Z"                      }
-  - { key: Back,                    chars: "\x7f"                        }
-  - { key: Back,     mods: Alt,     chars: "\x1b\x7f"                    }
-  - { key: Insert,                  chars: "\x1b[2~"                     }
-  - { key: Delete,                  chars: "\x1b[3~"                     }
-  - { key: Left,     mods: Shift,   chars: "\x1b[1;2D"                   }
-  - { key: Left,     mods: Control, chars: "\x1b[1;5D"                   }
-  - { key: Left,     mods: Alt,     chars: "\x1b[1;3D"                   }
-  - { key: Left,                    chars: "\x1b[D",   mode: ~AppCursor  }
-  - { key: Left,                    chars: "\x1bOD",   mode: AppCursor   }
-  - { key: Right,    mods: Shift,   chars: "\x1b[1;2C"                   }
-  - { key: Right,    mods: Control, chars: "\x1b[1;5C"                   }
-  - { key: Right,    mods: Alt,     chars: "\x1b[1;3C"                   }
-  - { key: Right,                   chars: "\x1b[C",   mode: ~AppCursor  }
-  - { key: Right,                   chars: "\x1bOC",   mode: AppCursor   }
-  - { key: Up,       mods: Shift,   chars: "\x1b[1;2A"                   }
-  - { key: Up,       mods: Control, chars: "\x1b[1;5A"                   }
-  - { key: Up,       mods: Alt,     chars: "\x1b[1;3A"                   }
-  - { key: Up,                      chars: "\x1b[A",   mode: ~AppCursor  }
-  - { key: Up,                      chars: "\x1bOA",   mode: AppCursor   }
-  - { key: Down,     mods: Shift,   chars: "\x1b[1;2B"                   }
-  - { key: Down,     mods: Control, chars: "\x1b[1;5B"                   }
-  - { key: Down,     mods: Alt,     chars: "\x1b[1;3B"                   }
-  - { key: Down,                    chars: "\x1b[B",   mode: ~AppCursor  }
-  - { key: Down,                    chars: "\x1bOB",   mode: AppCursor   }
-  - { key: F1,                      chars: "\x1bOP"                      }
-  - { key: F2,                      chars: "\x1bOQ"                      }
-  - { key: F3,                      chars: "\x1bOR"                      }
-  - { key: F4,                      chars: "\x1bOS"                      }
-  - { key: F5,                      chars: "\x1b[15~"                    }
-  - { key: F6,                      chars: "\x1b[17~"                    }
-  - { key: F7,                      chars: "\x1b[18~"                    }
-  - { key: F8,                      chars: "\x1b[19~"                    }
-  - { key: F9,                      chars: "\x1b[20~"                    }
-  - { key: F10,                     chars: "\x1b[21~"                    }
-  - { key: F11,                     chars: "\x1b[23~"                    }
-  - { key: F12,                     chars: "\x1b[24~"                    }
-  - { key: F1,       mods: Shift,   chars: "\x1b[1;2P"                   }
-  - { key: F2,       mods: Shift,   chars: "\x1b[1;2Q"                   }
-  - { key: F3,       mods: Shift,   chars: "\x1b[1;2R"                   }
-  - { key: F4,       mods: Shift,   chars: "\x1b[1;2S"                   }
-  - { key: F5,       mods: Shift,   chars: "\x1b[15;2~"                  }
-  - { key: F6,       mods: Shift,   chars: "\x1b[17;2~"                  }
-  - { key: F7,       mods: Shift,   chars: "\x1b[18;2~"                  }
-  - { key: F8,       mods: Shift,   chars: "\x1b[19;2~"                  }
-  - { key: F9,       mods: Shift,   chars: "\x1b[20;2~"                  }
-  - { key: F10,      mods: Shift,   chars: "\x1b[21;2~"                  }
-  - { key: F11,      mods: Shift,   chars: "\x1b[23;2~"                  }
-  - { key: F12,      mods: Shift,   chars: "\x1b[24;2~"                  }
-  - { key: F1,       mods: Control, chars: "\x1b[1;5P"                   }
-  - { key: F2,       mods: Control, chars: "\x1b[1;5Q"                   }
-  - { key: F3,       mods: Control, chars: "\x1b[1;5R"                   }
-  - { key: F4,       mods: Control, chars: "\x1b[1;5S"                   }
-  - { key: F5,       mods: Control, chars: "\x1b[15;5~"                  }
-  - { key: F6,       mods: Control, chars: "\x1b[17;5~"                  }
-  - { key: F7,       mods: Control, chars: "\x1b[18;5~"                  }
-  - { key: F8,       mods: Control, chars: "\x1b[19;5~"                  }
-  - { key: F9,       mods: Control, chars: "\x1b[20;5~"                  }
-  - { key: F10,      mods: Control, chars: "\x1b[21;5~"                  }
-  - { key: F11,      mods: Control, chars: "\x1b[23;5~"                  }
-  - { key: F12,      mods: Control, chars: "\x1b[24;5~"                  }
-  - { key: F1,       mods: Alt,     chars: "\x1b[1;6P"                   }
-  - { key: F2,       mods: Alt,     chars: "\x1b[1;6Q"                   }
-  - { key: F3,       mods: Alt,     chars: "\x1b[1;6R"                   }
-  - { key: F4,       mods: Alt,     chars: "\x1b[1;6S"                   }
-  - { key: F5,       mods: Alt,     chars: "\x1b[15;6~"                  }
-  - { key: F6,       mods: Alt,     chars: "\x1b[17;6~"                  }
-  - { key: F7,       mods: Alt,     chars: "\x1b[18;6~"                  }
-  - { key: F8,       mods: Alt,     chars: "\x1b[19;6~"                  }
-  - { key: F9,       mods: Alt,     chars: "\x1b[20;6~"                  }
-  - { key: F10,      mods: Alt,     chars: "\x1b[21;6~"                  }
-  - { key: F11,      mods: Alt,     chars: "\x1b[23;6~"                  }
-  - { key: F12,      mods: Alt,     chars: "\x1b[24;6~"                  }
-  - { key: F1,       mods: Super,   chars: "\x1b[1;3P"                   }
-  - { key: F2,       mods: Super,   chars: "\x1b[1;3Q"                   }
-  - { key: F3,       mods: Super,   chars: "\x1b[1;3R"                   }
-  - { key: F4,       mods: Super,   chars: "\x1b[1;3S"                   }
-  - { key: F5,       mods: Super,   chars: "\x1b[15;3~"                  }
-  - { key: F6,       mods: Super,   chars: "\x1b[17;3~"                  }
-  - { key: F7,       mods: Super,   chars: "\x1b[18;3~"                  }
-  - { key: F8,       mods: Super,   chars: "\x1b[19;3~"                  }
-  - { key: F9,       mods: Super,   chars: "\x1b[20;3~"                  }
-  - { key: F10,      mods: Super,   chars: "\x1b[21;3~"                  }
-  - { key: F11,      mods: Super,   chars: "\x1b[23;3~"                  }
-  - { key: F12,      mods: Super,   chars: "\x1b[24;3~"                  }
diff --git a/.config/fish/config.fish b/.config/fish/config.fish
index 7fe9ecd..feb6705 100644
--- a/.config/fish/config.fish
+++ b/.config/fish/config.fish
@@ -5,11 +5,15 @@ set -g -x XDG_PICTURES_DIR "$HOME/media/pics"
 set -g -x XDG_VIDEOS_DIR "$HOME/media"
 
 set -g -x PYTHONPATH "$HOME/root/lib/py/" $PYTHONPATH
+set -g -x PATH  $PATH "$HOME/code/bio/pangraph/bin"
 
 # Set global environmental variables
 set -g -x MAILCAPS /home/nolln/.config/mutt/mailcap
 set -g -x TEXINPUTS .:/home/nolln/docs//:/usr/share/texmf-dist/tex//
 set -g -x QT_QPA_PLATFORM xcb
+set -g -x LS_COLORS 'ow=36:di=34:fi=0:ex=32:ln=35:'
+
+set -g -x JULIA_NUM_THREADS 4
 
 # Set system apps
 set EDITOR nvim
@@ -29,22 +33,31 @@ alias ll='ls -alF'
 alias la='ls -A'
 alias l='ls -CF'
 
+alias ..='cd ..'
+alias ...='cd ../..'
+alias ....='cd ../../..'
+
 alias vim='nvim'
 alias gdb='gdb -q'
 alias mail='neomutt'
 alias tmux='tmux -f $HOME/.config/tmux/config'
 alias screenshot='grim -g (slurp) - | wl-copy'
 alias lofi="mpv 'https://www.youtube.com/watch?v=5qap5aO4i9A' --no-video"
-
+alias wttr='curl wttr.in'
+alias dotfiles='/usr/bin/git --git-dir=$HOME/.dotfiles --work-tree=$HOME'
 alias dbg='~/pyenv/bin/gdbgui'
+alias vpn='/opt/cisco/anyconnect/bin/vpnui'
 
-# Configuration file save
-alias dotfiles='/usr/bin/git --git-dir=$HOME/.dotfiles --work-tree=$HOME'
+# remote
+alias vpn-ucsb='sudo openconnect --protocol=pulse https://ps.vpn.ucsb.edu/ra'
+
+alias ssh-pod='ssh -X nbnoll@pod-login1.cnsi.ucsb.edu -t "zsh --login"'
+alias mnt-pod='sshfs nbnoll@pod-login1.cnsi.ucsb.edu:/home/nbnoll $HOME/mnt/cluster'
+
+alias ssh-knot='ssh -X nbnoll@knot7.cnsi.ucsb.edu'
+alias mnt-knot='sshfs nbnoll@knot7.cnsi.ucsb.edu:/home/nbnoll $HOME/mnt/cluster'
 
-alias scicore='ssh -X nolln@login.scicore.unibas.ch'
-alias piboi='ssh -X nolln@192.168.0.75'
-alias mntC='sshfs nolln@login.scicore.unibas.ch:/scicore/home/neher/nolln $HOME/mnt/cluster'
-alias umntC='umount $HOME/mnt/cluster'
+alias umnt-cluster='umount $HOME/mnt/cluster'
 
 # Prompt configuration.
 set PURE_REVERSE_PROMPT_SYMBOL_IN_VIMODE false
diff --git a/.config/fish/fish_variables b/.config/fish/fish_variables
index 69ca71d..33bb6b2 100644
--- a/.config/fish/fish_variables
+++ b/.config/fish/fish_variables
@@ -44,7 +44,7 @@ SETUVAR fish_pager_color_completion:normal
 SETUVAR fish_pager_color_description:yellow
 SETUVAR fish_pager_color_prefix:white\x1e\x2d\x2dbold\x1e\x2d\x2dunderline
 SETUVAR fish_pager_color_progress:brwhite\x1e\x2d\x2dbackground\x3dcyan
-SETUVAR fish_user_paths:/home/nolln/root/bin\x1e/home/nolln/\x2eyarn/bin\x1e/home/nolln/code/bin\x1e/home/nolln/go/bin\x1e/home/nolln/\x2elocal/bin\x1e/home/nolln/code/muon/bin\x1e/home/nolln/\x2efzf/bin\x1e/home/nolln/opt/Vivado/2019\x2e2/bin
+SETUVAR fish_user_paths:/home/nolln/\x2epoetry/bin\x1e/home/nolln/root/bin\x1e/home/nolln/\x2eyarn/bin\x1e/home/nolln/code/bin\x1e/home/nolln/go/bin\x1e/home/nolln/\x2elocal/bin\x1e/home/nolln/code/muon/bin\x1e/home/nolln/\x2efzf/bin\x1e/home/nolln/opt/Vivado/2019\x2e2/bin
 SETUVAR pure_begin_prompt_with_current_directory:true
 SETUVAR pure_color_command_duration:pure_color_warning
 SETUVAR pure_color_current_directory:pure_color_primary
diff --git a/.config/msmtp/config b/.config/msmtp/config
index 45405ff..7ab7008 100644
--- a/.config/msmtp/config
+++ b/.config/msmtp/config
@@ -13,12 +13,20 @@ from           nbnoll@eml.cc
 user           nbnoll@eml.cc
 passwordeval   "gpg --quiet --for-your-eyes-only --no-tty --decrypt ~/.config/password/fastmail.gpg"
 
-# workmail
-account        work
-host           smtp-ext.unibas.com
+# gmail
+account        gmail
+host           smtp.gmail.com
 port           587
-from           nicholas.noll@unibas.ch
-user           nicholas.noll@unibas.ch
-passwordeval   "gpg --quiet --for-your-eyes-only --no-tty --decrypt ~/.config/password/workmail.gpg"
+from           nnoll523@gmail.com
+user           nnoll523@gmail.com
+passwordeval   "gpg --quiet --for-your-eyes-only --no-tty --decrypt ~/.config/password/gmail.gpg"
+
+# gmail
+account        kitp
+host           smtp.gmail.com
+port           587
+from           nnoll@ucsb.edu
+user           nnoll@ucsb.edu
+passwordeval   "gpg --quiet --for-your-eyes-only --no-tty --decrypt ~/.config/password/ucsb.gpg"
 
 account default : main
diff --git a/.config/mutt/mail b/.config/mutt/mail
index 3c374c2..bc98f1f 100644
--- a/.config/mutt/mail
+++ b/.config/mutt/mail
@@ -27,9 +27,12 @@ set crypt_replysignencrypted
 named-mailboxes "----------- Main -----------" =main
 named-mailboxes "main/Inbox" =main/INBOX 
 mailboxes =main/Archive =main/Drafts =main/Sent =main/Trash
-named-mailboxes "----------- Work -----------" =work
-named-mailboxes "work/Inbox" =work/INBOX
-mailboxes =work/Drafts =work/Sent =work/Trash
+named-mailboxes "----------- Kitp -----------" =kitp
+named-mailboxes "kitp/Inbox"   =kitp/INBOX
+named-mailboxes "kitp/Drafts"  =kitp/[Gmail].Drafts 
+named-mailboxes "kitp/Trash"   =kitp/[Gmail].Trash
+named-mailboxes "kitp/Sent"    ="kitp/[Gmail].Sent Mail"
+named-mailboxes "kitp/Archive" ="kitp/_Archive"
 named-mailboxes "----------- Gmail -----------" =gmail
 named-mailboxes "gmail/Inbox"   =gmail/INBOX
 named-mailboxes "gmail/Drafts"  =gmail/[Gmail].Drafts 
@@ -41,5 +44,5 @@ named-mailboxes "gmail/Archive" ="gmail/[Gmail].Store"
 source ~/.config/mutt/usr/main
 
 folder-hook main/* source ~/.config/mutt/usr/main
-folder-hook work/* source ~/.config/mutt/usr/work
+folder-hook kitp/* source ~/.config/mutt/usr/kitp
 folder-hook gmail/* source ~/.config/mutt/usr/gmail
diff --git a/.config/mutt/muttrc b/.config/mutt/muttrc
index 74cff72..c214105 100644
--- a/.config/mutt/muttrc
+++ b/.config/mutt/muttrc
@@ -1,5 +1,5 @@
 ########################
-# Basic settings
+# basic settings
 
 source $HOME/.config/mutt/mail
 source $HOME/.config/mutt/display
@@ -9,11 +9,17 @@ source $HOME/.config/mutt/colors
 auto_view text/plain text/html
 set sleep_time = 0
 
-# Sidebar
+# sidebar
 set sidebar_visible
 set sidebar_format = "%B%?F? [%F]?%* %?N?%N/?%S"
 set mail_check_stats
 
-# Aliases
+# threads
+set uncollapse_new  = yes
+set uncollapse_jump = yes
+set collapse_unread = no
+folder-hook . push '<collapse-all>' #collapse by default
+
+# aliases
 alias erik.vannimwegen Erik van Nimwegen <erik.vannimwegen@unibas.ch>
 alias boris Boris Shraiman <shraiman@kitp.ucsb.edu>
diff --git a/.config/mutt/usr/gmail b/.config/mutt/usr/gmail
index c2a2e7d..15bc439 100644
--- a/.config/mutt/usr/gmail
+++ b/.config/mutt/usr/gmail
@@ -6,6 +6,7 @@ set spoolfile  = "+gmail/INBOX"
 set postponed  = "+gmail/[Gmail].Drafts"
 set trash      = "+gmail/[Gmail].Trash"
 set record     = "+gmail/[Gmail].Sent Mail"
+set sendmail   = "/usr/bin/msmtp -a gmail"
 
 # account specific macros
 macro index,pager a "<save-message>+gmail/[Gmail].Store<enter>" "Archive Message"
diff --git a/.config/mutt/usr/main b/.config/mutt/usr/main
index 27f127e..fe4cf57 100644
--- a/.config/mutt/usr/main
+++ b/.config/mutt/usr/main
@@ -7,6 +7,7 @@ set record     = "+main/Sent"
 set postponed  = "+main/Drafts"
 set trash      = "+main/Trash"
 set mbox       = "+main/Archive"
+set sendmail   = "/usr/bin/msmtp -a main"
 
 # account specific macros
 macro index,pager a "<save-message>+main/Archive<enter>" "Archive Message"
diff --git a/.config/mutt/usr/work b/.config/mutt/usr/work
deleted file mode 100644
index c00f3b3..0000000
--- a/.config/mutt/usr/work
+++ /dev/null
@@ -1,12 +0,0 @@
-# vim: ft=muttrc
-
-# Unibas account
-set from       = "nicholas.noll@unibas.ch"
-set spoolfile  = "+work/INBOX"
-set record     = "+work/Sent"
-set postponed  = "+work/Drafts"
-set trash      = "+work/Trash"
-set mbox       = "+work/Archive"
-
-macro index,pager a "<save-message>+work/Archive<enter>" "Archive Message"
-macro index,pager D "<save-message>+work/Trash<enter>" "Trash Message"
diff --git a/.config/nvim/after/syntax/c.vim b/.config/nvim/after/syntax/c.vim
index 019af16..04896e7 100644
--- a/.config/nvim/after/syntax/c.vim
+++ b/.config/nvim/after/syntax/c.vim
@@ -1,6 +1,6 @@
 syn keyword cgoInt          uint8 uint16 uint32 uint64 int8 int16 int32 int64 uint uintptr intptr byte ubyte sbyte ulong vlong uvlong rune
 syn keyword cgoFloat        float32 float64
-syn keyword cgoType         error string
+syn keyword cgoType         string
 syn keyword cgoConstant     nil 
 syn keyword cgoPanic        panicf
 
diff --git a/.config/nvim/init.vim b/.config/nvim/init.vim
index c8633ce..f4fce83 100644
--- a/.config/nvim/init.vim
+++ b/.config/nvim/init.vim
@@ -17,33 +17,32 @@ Plug 'nathanaelkane/vim-indent-guides'         " Indent blocks.
 Plug 'unblevable/quick-scope'                  " Quick horizontal movements.
 Plug 'https://github.com/adelarsq/vim-matchit' " Extended match operations for % operator
 
-Plug 'neovim/nvim-lsp'
-Plug 'haorenW1025/diagnostic-nvim'
+Plug 'neovim/nvim-lspconfig'
 Plug 'Shougo/deoplete.nvim', { 'do': ':UpdateRemotePlugins' }
 Plug 'Shougo/deoplete-lsp'
 
 Plug 'junegunn/fzf', { 'dir': '~/.fzf', 'do': './install --all' }
-Plug 'junegunn/fzf.vim'   " Fuzzy file searchs
+Plug 'junegunn/fzf.vim'          " Fuzzy file searchs
 
 Plug 'simeji/winresizer'  " Nice window resize
 
-" Writing help
-Plug 'iamcco/markdown-preview.nvim', { 'do': 'cd app & yarn install'  }
-
 " Version control
 Plug 'airblade/vim-gitgutter'
-Plug 'tpope/vim-fugitive'
 
 " Language specific
-Plug 'lervag/vimtex'            " LaTeX
-Plug 'plasticboy/vim-markdown'  " Markdown
-Plug 'dag/vim-fish'             " Fish
-Plug 'fatih/vim-go'             " Go
-Plug 'vim-python/python-syntax' " Python 
+Plug 'lervag/vimtex'                " LaTeX
+Plug 'plasticboy/vim-markdown'      " Markdown
+Plug 'dag/vim-fish'                 " Fish
+Plug 'fatih/vim-go'                 " Go
+Plug 'JuliaEditorSupport/julia-vim' " Julia
+Plug 'vim-python/python-syntax'     " Python 
 
 " Formatting
 Plug 'sbdchd/neoformat'
 
+Plug 'leafgarland/typescript-vim'
+Plug 'peitalin/vim-jsx-typescript'
+
 call plug#end()
 
 packadd termdebug
diff --git a/.config/nvim/leaders.vim b/.config/nvim/leaders.vim
index 6b8b290..95ad868 100644
--- a/.config/nvim/leaders.vim
+++ b/.config/nvim/leaders.vim
@@ -11,13 +11,8 @@ nnoremap <Leader>o :only<CR>
 nnoremap <Leader>\| :wincmd \|<CR>
 nnoremap <Leader>= :wincmd =<CR>
 nnoremap <Leader>r :wincmd R<CR>
-nnoremap <Leader>h :wincmd h<CR>
-nnoremap <Leader>j :wincmd j<CR>
-nnoremap <Leader>k :wincmd k<CR>
-nnoremap <Leader>l :wincmd l<CR>
 
 " remove highlights
-
 nnoremap <Leader><Leader>R<CR> :so ~/.config/nvim/init.vim
 
 " testing
diff --git a/.config/nvim/plugins.vim b/.config/nvim/plugins.vim
index 52cba75..174386c 100644
--- a/.config/nvim/plugins.vim
+++ b/.config/nvim/plugins.vim
@@ -5,37 +5,56 @@
 " Diagnostics for LSP
 
 lua <<
-    local lsp = require 'nvim_lsp'
-    local dig = require 'diagnostic'
+    local lsp = require('lspconfig')
+
+    local setup = function(client, buffer)
+        local function set_keymap(...) vim.api.nvim_buf_set_keymap(buffer, ...) end
+        local function set_option(...) vim.api.nvim_buf_set_option(buffer, ...) end
+
+        set_option('omnifunc', 'v:lua.vim.lsp.omnifunc')
+
+        local opts = { noremap=true, silent=true }
+
+        set_keymap('n', 'gD', '<cmd>lua vim.lsp.buf.declaration()<CR>', opts)
+        set_keymap('n', 'gd', '<cmd>lua vim.lsp.buf.definition()<CR>', opts)
+        set_keymap('n', 'K', '<cmd>lua vim.lsp.buf.hover()<CR>', opts)
+        set_keymap('n', 'gi', '<cmd>lua vim.lsp.buf.implementation()<CR>', opts)
+        set_keymap('n', '<C-k>', '<cmd>lua vim.lsp.buf.signature_help()<CR>', opts)
+        set_keymap('n', 'gr', '<cmd>lua vim.lsp.buf.references()<CR>', opts)
+        set_keymap('n', '[c', '<cmd>lua vim.lsp.diagnostic.goto_prev()<CR>', opts)
+        set_keymap('n', ']c', '<cmd>lua vim.lsp.diagnostic.goto_next()<CR>', opts)
+        set_keymap('n', '<space>e', '<cmd>lua vim.lsp.diagnostic.show_line_diagnostics()<CR>', opts)
+        --[[
+        set_keymap('n', '<space>dt', '<cmd>lua vim.lsp.buf.type_definition()<CR>', opts)
+        set_keymap('n', '<space>rn', '<cmd>lua vim.lsp.buf.rename()<CR>', opts)
+        --]]
+    end
 
-    local function on_attach()
-        dig.on_attach()
+    local servers = { 'clangd', 'julials', 'tsserver' }
+    for _, s in ipairs(servers) do
+        lsp[s].setup {
+            on_attach=setup,
+            flags = {
+                debounce_text_changes = 150,
+            }
+        }
     end
 
-    lsp.clangd.setup{on_attach=on_attach}
+    vim.lsp.handlers["textDocument/publishDiagnostics"] = vim.lsp.with(
+        vim.lsp.diagnostic.on_publish_diagnostics, {
+            virtual_text = false
+        }
+    )
 .
 
-nnoremap <silent> gd <cmd>lua vim.lsp.buf.declaration()<CR>
-nnoremap <silent> gD <cmd>lua vim.lsp.buf.definition()<CR>
-nnoremap <silent> gr <cmd>lua vim.lsp.buf.references()<CR>
-nnoremap <silent> gi <cmd>lua vim.lsp.buf.implementation()<CR>
-nnoremap <silent> K  <cmd>lua vim.lsp.buf.hover()<CR>
-nnoremap <silent> g0 <cmd>lua vim.lsp.buf.document_symbol()<CR>
-
-nnoremap <silent> ]c :NextDiagnosticCycle<CR>
-nnoremap <silent> [c :PrevDiagnostic<CR>
-
-let g:deoplete#enable_at_startup = 1
-let g:diagnostic_insert_delay = 1
-
 " gdb debugging
 let g:termdebug_wide = 1
 
-" Latex configuration
+" latex configuration
 let g:tex_flavor="latex"
 let g:vimtex_view_general_viewer="zathura"
 
-" Show git gutter
+" show git gutter
 let g:gitgutter_grep=''
 let g:gitgutter_set_sign_backgrounds = 1
 
@@ -61,15 +80,16 @@ let g:python_highlight_all = 1
 " Clang support
 autocmd FileType c,cpp setlocal commentstring=//\ %s
 
-" Markdown support
-let g:vim_markdown_preview_pandoc=1
-let g:vim_markdown_math=1
-
 " prettier
 " when running at every change you may want to disable quickfix
-let g:prettier#autoformat = 0
+function RunPrettier()
+    let l:winview = winsaveview()
+    1,$ !yarn -s prettier --stdin-filepath %:p --loglevel silent
+    call winrestview(l:winview)
+endfunction
 
 augroup fmt
     autocmd!
-    autocmd BufWritePre *.js,*.jsx,*.mjs,*.ts,*.tsx,*.css,*.less,*.scss,*.json,*.graphql,*.md,*.vue,*.yaml,*.html undojoin | Neoformat prettier
+    autocmd BufWritePre *.js,*.jsx,*.mjs,*.ts,*.tsx,*.css,*.less,*.scss,*.json,*.graphql,*.md,*.vue,*.yaml,*.html call RunPrettier()
 augroup END
+autocmd BufNewFile,BufRead *.tsx,*.jsx set filetype=typescriptreact
diff --git a/.config/nvim/settings.vim b/.config/nvim/settings.vim
index 0f13e6d..4bfc4c1 100644
--- a/.config/nvim/settings.vim
+++ b/.config/nvim/settings.vim
@@ -21,7 +21,7 @@ set expandtab
 
 " Set text display properties.
 set smartindent
-set wrap
+set nowrap
 set linebreak
 set nolist
 
diff --git a/.config/offlineimap/config b/.config/offlineimap/config
index 402b490..737a7a4 100644
--- a/.config/offlineimap/config
+++ b/.config/offlineimap/config
@@ -1,6 +1,6 @@
 [general]
 ui = ttyui
-accounts = main, work, gmail
+accounts = main, kitp, gmail
 pythonfile = ~/.config/offlineimap/func.py
 
 [Account main]
@@ -20,24 +20,6 @@ remotepasseval = get_pass("~/.config/password/fastmail.gpg")
 maxconnections = 3
 sslcacertfile = /etc/ssl/certs/ca-certificates.crt
 
-[Account work]
-localrepository = work-local
-remoterepository = work-remote
-
-[Repository work-local]
-type = Maildir
-localfolders = ~/mail/work
-
-[Repository work-remote]
-type = IMAP
-remotehost = mail.unibas.ch
-remoteport = 993
-remoteuser = nicholas.noll@unibas.ch
-remotepasseval = get_pass("~/.config/password/workmail.gpg")
-maxconnections = 3
-sslcacertfile = /etc/ssl/certs/ca-certificates.crt
-readonly = False
-
 [Account gmail]
 localrepository = gmail-local
 remoterepository = gmail-remote
@@ -53,3 +35,19 @@ remotepasseval = get_pass("~/.config/password/gmail.gpg")
 folderfilter = lambda folder: folder in ['INBOX', '[Gmail]/Drafts', '[Gmail]/Sent Mail', '[Gmail]/Store', '[Gmail]/Trash']
 maxconnections = 3
 sslcacertfile = /etc/ssl/certs/ca-certificates.crt
+
+[Account kitp]
+localrepository = kitp-local
+remoterepository = kitp-remote
+
+[Repository kitp-local]
+type = GmailMaildir
+localfolders = ~/mail/kitp
+
+[Repository kitp-remote]
+type = Gmail
+remoteuser = nnoll@ucsb.edu
+remotepasseval = get_pass("~/.config/password/ucsb.gpg")
+folderfilter = lambda folder: folder in ['INBOX', '[Gmail]/Drafts', '[Gmail]/Sent Mail', '_Archive', '[Gmail]/Trash']
+maxconnections = 3
+sslcacertfile = /etc/ssl/certs/ca-certificates.crt
diff --git a/.config/offlineimap/func.pyc b/.config/offlineimap/func.pyc
index d911971..42382e8 100644
--- a/.config/offlineimap/func.pyc
+++ b/.config/offlineimap/func.pyc
diff --git a/.config/picom/config b/.config/picom/config
index a402f2f..7af894b 100644
--- a/.config/picom/config
+++ b/.config/picom/config
@@ -30,6 +30,11 @@ opacity-rule = [
     "99:class_g = 'Chromium'",
     "99:class_g = 'Inkscape'",
     "99:class_g = 'Gimp'",
+    "100:class_g = 'eqgame.exe'",
+    "100:class_g = 'Temtem.exe'",
+    "100:class_g = 'DaggerfallUnity'",
+    "100:class_g = 'steam'",
+    "100:class_g = 'terraria'",
 ];
 
 vsync              = true;
diff --git a/.config/qutebrowser/bookmarks/urls b/.config/qutebrowser/bookmarks/urls
index 1e7497d..ce94ddd 100644
--- a/.config/qutebrowser/bookmarks/urls
+++ b/.config/qutebrowser/bookmarks/urls
@@ -2,3 +2,4 @@ https://stackoverflow.com/questions/1083172/how-to-mmap-the-stack-for-the-clone-
 http://www.sandpile.org/x86/gpr.htm sandpile.org -- x86 architecture -- general purpose registers
 https://github.com/danistefanovic/build-your-own-x danistefanovic/build-your-own-x: 🤓 Build your own (insert technology here)
 https://chryswoods.com/vector_c++/immintrin.html chryswoods.com | Part 2: AVX Intrinsics
+qute://pdfjs/web/viewer.html?filename=tmpq63kdiwg_117382v1.full.pdf&file=&source=https://www.biorxiv.org/content/10.1101/117382v1.full.pdf The Drosophila Embryo at Single Cell Transcriptome Resolution - tmpq63kdiwg_117382v1.full.pdf
diff --git a/.config/qutebrowser/config.py b/.config/qutebrowser/config.py
index 3d36eb2..816d848 100644
--- a/.config/qutebrowser/config.py
+++ b/.config/qutebrowser/config.py
@@ -1,3 +1,8 @@
+from operator import methodcaller
+from qutebrowser.api import interceptor, message
+
+config.load_autoconfig(False)
+
 nord = {
     # Polar Night
     'nord0': '#2e3440',
@@ -335,23 +340,68 @@ c.colors.tabs.selected.odd.fg = nord['nord5']
 ## Type: QtColor
 # c.colors.webpage.bg = 'white'
 
-# Fonts
-c.completion.height = "33%"
+# ------------------------------------------------------------------------
+# fonts
+
+font = "12pt consolas"
+
+c.fonts.statusbar = font
+c.fonts.prompts = font
+c.fonts.completion.category = font
+c.fonts.completion.entry = font
+c.fonts.tabs.selected = font
+c.fonts.tabs.unselected = font
+
+# ------------------------------------------------------------------------
+# paths
 
-c.fonts.tabs = "12pt consolas"
-c.fonts.statusbar = "12pt consolas"
-c.fonts.prompts = "12pt consolas"
-c.fonts.completion.category = "12pt consolas"
-c.fonts.completion.entry = "12pt consolas"
+c.downloads.location.directory = "~/pulls"
+
+# ------------------------------------------------------------------------
+# features
+
+c.spellcheck.languages = ["en-US"]
 
 c.content.pdfjs = True
+c.content.blocking.method = "both"
+
+c.completion.height = "33%"
+c.completion.open_categories = ["quickmarks", "history"]
+
+# ------------------------------------------------------------------------
+# aliases
+
+c.aliases = {'q': 'quit', 'w': 'session-save', 'wq': 'quit --save'}
+
+# ------------------------------------------------------------------------
+# keybinds
+
+config.bind(',c',  'spawn -d chromium {url}')
+config.bind(',js', 'config-cycle content.javascript.enabled')
+
+# ------------------------------------------------------------------------
+# search engines 
+
+c.url.searchengines['w']   = 'https://en.wikipedia.org/w/index.php?search={}&title=Special%3ASearch&fulltext=1&ns0=1'
+c.url.searchengines['g']   = 'https://www.google.com/search?q={}'
+c.url.searchengines['sx']  = 'https://searx.info/?q={}&categories=general&language=en-US'
+c.url.searchengines['sc']  = 'https://scholar.google.com/scholar?hl=en-US&as_sdt=0%2C5&q={}&btnG='
+c.url.searchengines['os']  = 'https://wiki.archlinux.org/index.php?title=Special%3ASearch&search={}&go=Go'
+c.url.searchengines['am']  = 'https://www.amazon.com/s/ref=nb_sb_noss?url=search-alias%3Daps&field-keywords={}'
+c.url.searchengines['py']  = 'https://docs.python.org/3/library/{}.html'
+
+# ------------------------------------------------------------------------
+# security 
 
-# Security - look generic.
 c.content.headers.user_agent = "Mozilla/5.0 (Windows NT 6.1; rv:52.0) Gecko/20100101 Firefox/52.0"
 c.content.headers.accept_language = "en-US,en;q=0.5"
 c.content.headers.custom = {"accept": "text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8"}
 
+c.content.cookies.store = False
+c.content.canvas_reading = False
+c.content.webgl = False
 c.content.javascript.enabled = False
+
 js_whitelist = [
         "*://localhost/*",
         "*://github.com/*",
@@ -363,8 +413,31 @@ js_whitelist = [
         "*://covid19-scenarios.org/*",
         "*://*.wolfram.alpha.com/*",
         "*://software.intel.com/*",
+        "*://*.kitp.ucsb.edu/*",
 ]
 
 for site in js_whitelist:
     with config.pattern(site) as p:
         p.content.javascript.enabled = True
+
+# ------------------------------------------------------------------------
+# redirections
+
+redirection = {
+    "reddit.com": methodcaller('setHost', 'old.reddit.com'),
+    "www.reddit.com": methodcaller('setHost', 'old.reddit.com'),
+    "twitter.com": methodcaller('setHost', 'mobile.twitter.com'),
+    "www.twitter.com": methodcaller('setHost', 'mobile.twitter.com'),
+}
+
+def redirect(request):
+    if request.resource_type != interceptor.ResourceType.main_frame or request.request_url.scheme() in {"data", "blob"}:
+        return
+
+    url = request.request_url
+    new = redirection.get(url.host())
+    if new is not None and new(url) is not False:
+        message.info("redirecting to " + url.toString())
+        request.redirect(url)
+
+interceptor.register(redirect)
diff --git a/.config/qutebrowser/quickmarks b/.config/qutebrowser/quickmarks
index e97b73b..325c6c6 100644
--- a/.config/qutebrowser/quickmarks
+++ b/.config/qutebrowser/quickmarks
@@ -1,11 +1,9 @@
 hn https://news.ycombinator.com/
 git https://git.sr.ht/
-weather https://www.wunderground.com/weather/us/ca/goleta/93117
-blas http://www.netlib.org/blas/
 intel https://software.intel.com/sites/landingpage/IntrinsicsGuide/#techs=MMX,SSE,SSE2,SSE3,SSSE3,SSE4_1,SSE4_2,AVX,AVX2&text=xorpd&expand=6141,6144
-review https://submit-dev.biologists.org/review/queue?queueName=accepted_reviews&roleName=&pageCreated=1589382259386
 c http://www.quut.com/c/ANSI-C-grammar-y-2011.html
-gemm https://github.com/flame/how-to-optimize-gemm/wiki/Optimization_1x4_3
-edo https://viewsourcecode.org/snaptoken/kilo/03.rawInputAndOutput.html
 quanta https://www.quantamagazine.org/
-ttf https://formats.kaitai.io/ttf/ttf.svg
+npjl https://cheatsheets.quantecon.org/
+vae https://github.com/alecokas/flux-vae/blob/master/conv-vae/main.jl
+vk https://github.com/vinjn/awesome-vulkan#libraries
+mmo https://www.reddit.com/r/gamedev/comments/2s74pj/writing_a_game_server_protocol_parts_15_ongoing/
diff --git a/.config/tmux/config b/.config/tmux/config
index bda146e..983b70c 100644
--- a/.config/tmux/config
+++ b/.config/tmux/config
@@ -49,6 +49,10 @@ bind-key f resize-pane -Z
 bind-key [ copy-mode
 bind-key ] paste-buffer
 
+bind-key -T copy-mode-vi v send-keys -X begin-selection
+bind-key -T copy-mode-vi y send-keys -X copy-selection
+bind-key -T copy-mode-vi r send-keys -X rectangle-toggle
+
 # URL view
 bind-key u capture-pane \;\
            save-buffer /tmp/tmux-buffer \;\
diff --git a/.gdbinit b/.gdbinit
index d73fe86..eb94aa2 100644
--- a/.gdbinit
+++ b/.gdbinit
@@ -2227,7 +2227,7 @@ set breakpoint pending on
 
 python Dashboard.start()
 
-dashboard source
+# dashboard source
 
 # File variables ---------------------------------------------------------------
 
diff --git a/.xinitrc b/.xinitrc
index 4962749..6ee4b84 100644
--- a/.xinitrc
+++ b/.xinitrc
@@ -7,12 +7,12 @@ cpu() {
 }
 
 mail() {
-    NEWMAIL=$(ls -s ~/mail/*/INBOX/new | awk '{if ($1 == "total") { sum += $2} }; END {print sum}')
+    NEWMAIL=$(expr $(ls -1 ~/mail/*/INBOX/new | wc -l) - '7')
 
-    if [ "${NEWMAIL%% *}" -eq 0 ]; then
-        printf " (%s)" "${NEWMAIL%% *}"
+    if [ "$NEWMAIL" -eq 0 ]; then
+        printf " (%s)" "$NEWMAIL"
     else
-        printf " (%s)" "${NEWMAIL%% *}"
+        printf " (%s)" "$NEWMAIL"
     fi
 }
 
@@ -58,4 +58,5 @@ done &
 picom --config ~/.config/picom/config &
 feh --bg-scale ~/media/pics/honnold_wp.jpg
 
+xbanish &
 exec dwm
author	Nicholas Noll <nbnoll@eml.cc>	2021-09-09 09:09:19 -0700
committer	Nicholas Noll <nbnoll@eml.cc>	2021-09-09 09:09:19 -0700
commit	d73b9ad6094d37864f7859871c4fdf705d9fa60c (patch)
tree	93e8b8e25dbaa7b0b81ef0c264134c16cf23ce4f
parent	39f710dfb2010c4df0c14f5079173562071d6a65 (diff)