aboutsummaryrefslogtreecommitdiff
AgeCommit message (Expand)Author
2020-07-28fix: updated improper property accessesNicholas Noll
2020-07-28fix: updated the function calling convention of mergeNicholas Noll
2020-07-28proto: implemented first pass at dealing with degenerate chains in the same i...Nicholas Noll
2020-07-28feat: added path mergers to deal with transitive edgesNicholas Noll
2020-07-28fix: remove non-junctions associated to singleton pathsNicholas Noll
2020-07-28fix: correct set of listsNicholas Noll
2020-07-28feat: initial cases for merging implemented as remove_transitivesNicholas Noll
2020-07-28feat: added stringifier method to junction for debuggingNicholas Noll
2020-07-28fix: small typosNicholas Noll
2020-07-28feat: added junction class to track transitive edgesNicholas Noll
2020-07-28feat: added stringifier methods to custom classes for debuggingNicholas Noll
2020-07-28Merge pull request #2 from nnoll/feat/path-classNicholas Noll
2020-07-28fix: small typosNicholas Noll
2020-07-28proto: implemented scan of repeated blocks in 5Kb windowNicholas Noll
2020-07-28feat: block merge now returns the list of new_blocks created during the mergerNicholas Noll
2020-07-28feat: added ability to slice a path by nucleotide positionNicholas Noll
2020-07-28feat: added nucleotide positions for each node along a pathNicholas Noll
2020-07-27fix: small change to connected_components to reflect reference refactorNicholas Noll
2020-07-27refactor: change paths from storing hashes to reference to actual blockNicholas Noll
2020-07-27chore: checkinNicholas Noll
2020-07-27chore: remove last tryprint referenceNicholas Noll
2020-07-27rm: comment out breakpoints computation. too slowNicholas Noll
2020-07-27fix: put back in hard error on bad sequence reconstructionNicholas Noll
2020-07-27chore: remove debug printsNicholas Noll
2020-07-27chore: fix seqanpy importNicholas Noll
2020-07-27chore: rename node to clade inside treeNicholas Noll
2020-07-27chore: checkinNicholas Noll
2020-07-27fix: added wc pairs for non-standard basesNicholas Noll
2020-07-27chore: remove cherry filteringNicholas Noll
2020-07-27chore: add checks back inNicholas Noll
2020-07-27fix: changed merge method to use path objectNicholas Noll
2020-07-27fix: changed graph methods to reflect new path objectNicholas Noll
2020-07-27fix: to_dict on graph updated to reflect path classNicholas Noll
2020-07-27chore: rename util asstringNicholas Noll
2020-07-27feat: started pulling out sequence code to be it's own classNicholas Noll
2020-07-27feat: added length_of iso,num function for blockNicholas Noll
2020-07-27chore: harmonize method names of blockNicholas Noll
2020-07-27chore: add ylimNicholas Noll
2020-07-27fix: added length filterNicholas Noll
2020-07-27chore: checkinNicholas Noll
2020-07-27fix: manually reverse_complementNicholas Noll
2020-07-27fix: updated assay_junctions to correctly deal with inverted alignmentsNicholas Noll
2020-07-23chore: change bandwidthNicholas Noll
2020-07-23feat: can now scan alignment by bandwidthNicholas Noll
2020-07-22chore: move from pyopa to seqanpyNicholas Noll
2020-07-22fix: forgot to finish renameNicholas Noll
2020-07-20feat: log how many blocks are contained in extension zoneNicholas Noll
2020-07-20feat: added script to align extended bases around minimap junctionsNicholas Noll
2020-07-20chore: small fixes to allow for simulated data to work againNicholas Noll
2020-07-14chore: rm debug printNicholas Noll
generated by cgit v1.2.1 (git 2.18.0) at 2024-05-19 08:35:39 +0000