feat: added buffered io to libn

1 files changed, 165 insertions, 70 deletions

diff --git a/compile_commands.json b/compile_commands.json
index cbb7712..0b9f71c 100644
--- a/compile_commands.json
+++ b/compile_commands.json
@@ -16,11 +16,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/coro.o",
-            "sys/libn/coro.c"
+            "build/libn/random.o",
+            "sys/libn/random.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/coro.c"
+        "file": "sys/libn/random.c"
     },
     {
         "arguments": [
@@ -34,16 +34,17 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
+            "-D_GNU_SOURCE",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libn/memory.o",
-            "sys/libn/memory.c"
+            "build/libmath/linalg.o",
+            "sys/libmath/linalg.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/memory.c"
+        "file": "sys/libmath/linalg.c"
     },
     {
         "arguments": [
@@ -57,19 +58,40 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
-            "-ffreestanding",
-            "-fno-builtin",
-            "-nostdlib",
+            "-D_GNU_SOURCE",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libc/string.o",
-            "sys/libc/string.c"
+            "build/libmath/blas1.o",
+            "sys/libmath/blas1.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libc/string.c"
+        "file": "sys/libmath/blas1.c"
+    },
+    {
+        "arguments": [
+            "clang",
+            "-c",
+            "-g",
+            "-march=native",
+            "-ffast-math",
+            "-fno-strict-aliasing",
+            "-fwrapv",
+            "-fms-extensions",
+            "-Wno-microsoft-anon-tag",
+            "-Wno-incompatible-function-pointer-types",
+            "-isystem",
+            "include/vendor/libc",
+            "-I",
+            "include",
+            "-o",
+            "build/libn/coro.o",
+            "sys/libn/coro.c"
+        ],
+        "directory": "/home/nolln/root",
+        "file": "sys/libn/coro.c"
     },
     {
         "arguments": [
@@ -89,11 +111,11 @@
             "-I",
             "include",
             "-o",
-            "build/libmath/lapack.o",
-            "sys/libmath/lapack.c"
+            "build/libmath/basic.o",
+            "sys/libmath/basic.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libmath/lapack.c"
+        "file": "sys/libmath/basic.c"
     },
     {
         "arguments": [
@@ -112,11 +134,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/random.o",
-            "sys/libn/random.c"
+            "build/libn/io.o",
+            "sys/libn/io.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/random.c"
+        "file": "sys/libn/io.c"
     },
     {
         "arguments": [
@@ -135,11 +157,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/test.o",
-            "sys/libn/test.c"
+            "build/libn/mmap.o",
+            "sys/libn/mmap.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/test.c"
+        "file": "sys/libn/mmap.c"
     },
     {
         "arguments": [
@@ -153,17 +175,42 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
-            "-D_GNU_SOURCE",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libmath/blas.o",
-            "sys/libmath/blas.c"
+            "build/libbio/simulate.o",
+            "sys/libbio/simulate.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libmath/blas.c"
+        "file": "sys/libbio/simulate.c"
+    },
+    {
+        "arguments": [
+            "clang",
+            "-c",
+            "-g",
+            "-march=native",
+            "-ffast-math",
+            "-fno-strict-aliasing",
+            "-fwrapv",
+            "-fms-extensions",
+            "-Wno-microsoft-anon-tag",
+            "-Wno-incompatible-function-pointer-types",
+            "-ffreestanding",
+            "-fno-builtin",
+            "-nostdlib",
+            "-isystem",
+            "include/vendor/libc",
+            "-I",
+            "include",
+            "-o",
+            "build/libc/string.o",
+            "sys/libc/string.c"
+        ],
+        "directory": "/home/nolln/root",
+        "file": "sys/libc/string.c"
     },
     {
         "arguments": [
@@ -201,16 +248,17 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
+            "-D_GNU_SOURCE",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libbio/test.o",
-            "sys/libbio/test.c"
+            "build/libmath/blas2.o",
+            "sys/libmath/blas2.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/test.c"
+        "file": "sys/libmath/blas2.c"
     },
     {
         "arguments": [
@@ -229,11 +277,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/io.o",
-            "sys/libn/io.c"
+            "build/libn/test.o",
+            "sys/libn/test.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/io.c"
+        "file": "sys/libn/test.c"
     },
     {
         "arguments": [
@@ -252,11 +300,11 @@
             "-I",
             "include",
             "-o",
-            "build/libbio/phylo.o",
-            "sys/libbio/phylo.c"
+            "build/libn/gz.o",
+            "sys/libn/gz.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/phylo.c"
+        "file": "sys/libn/gz.c"
     },
     {
         "arguments": [
@@ -275,11 +323,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/sort.o",
-            "sys/libn/sort.c"
+            "build/libn/memory.o",
+            "sys/libn/memory.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/sort.c"
+        "file": "sys/libn/memory.c"
     },
     {
         "arguments": [
@@ -293,19 +341,16 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
-            "-ffreestanding",
-            "-fno-builtin",
-            "-nostdlib",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libc/stdio.o",
-            "sys/libc/stdio.c"
+            "build/libbio/io/fasta.o",
+            "sys/libbio/io/fasta.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libc/stdio.c"
+        "file": "sys/libbio/io/fasta.c"
     },
     {
         "arguments": [
@@ -324,11 +369,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/gz.o",
-            "sys/libn/gz.c"
+            "build/libn/bufio.o",
+            "sys/libn/bufio.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/gz.c"
+        "file": "sys/libn/bufio.c"
     },
     {
         "arguments": [
@@ -342,16 +387,17 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
+            "-D_GNU_SOURCE",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libn/error.o",
-            "sys/libn/error.c"
+            "build/libmath/blas.o",
+            "sys/libmath/blas.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/error.c"
+        "file": "sys/libmath/blas.c"
     },
     {
         "arguments": [
@@ -370,11 +416,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/bufio.o",
-            "sys/libn/bufio.c"
+            "build/libn/error.o",
+            "sys/libn/error.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/bufio.c"
+        "file": "sys/libn/error.c"
     },
     {
         "arguments": [
@@ -393,11 +439,11 @@
             "-I",
             "include",
             "-o",
-            "build/libbio/align.o",
-            "sys/libbio/align.c"
+            "build/libn/string.o",
+            "sys/libn/string.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/align.c"
+        "file": "sys/libn/string.c"
     },
     {
         "arguments": [
@@ -416,11 +462,11 @@
             "-I",
             "include",
             "-o",
-            "build/libbio/io/newick.o",
-            "sys/libbio/io/newick.c"
+            "build/libn/sort.o",
+            "sys/libn/sort.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/io/newick.c"
+        "file": "sys/libn/sort.c"
     },
     {
         "arguments": [
@@ -434,16 +480,19 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
+            "-ffreestanding",
+            "-fno-builtin",
+            "-nostdlib",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libn/mmap.o",
-            "sys/libn/mmap.c"
+            "build/libc/stdio.o",
+            "sys/libc/stdio.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/mmap.c"
+        "file": "sys/libc/stdio.c"
     },
     {
         "arguments": [
@@ -485,11 +534,11 @@
             "-I",
             "include",
             "-o",
-            "build/libbio/io/fasta.o",
-            "sys/libbio/io/fasta.c"
+            "build/libbio/io/newick.o",
+            "sys/libbio/io/newick.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/io/fasta.c"
+        "file": "sys/libbio/io/newick.c"
     },
     {
         "arguments": [
@@ -508,11 +557,11 @@
             "-I",
             "include",
             "-o",
-            "build/libbio/simulate.o",
-            "sys/libbio/simulate.c"
+            "build/libbio/test.o",
+            "sys/libbio/test.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/simulate.c"
+        "file": "sys/libbio/test.c"
     },
     {
         "arguments": [
@@ -531,10 +580,56 @@
             "-I",
             "include",
             "-o",
-            "build/libn/string.o",
-            "sys/libn/string.c"
+            "build/libbio/phylo.o",
+            "sys/libbio/phylo.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/string.c"
+        "file": "sys/libbio/phylo.c"
+    },
+    {
+        "arguments": [
+            "clang",
+            "-c",
+            "-g",
+            "-march=native",
+            "-ffast-math",
+            "-fno-strict-aliasing",
+            "-fwrapv",
+            "-fms-extensions",
+            "-Wno-microsoft-anon-tag",
+            "-Wno-incompatible-function-pointer-types",
+            "-isystem",
+            "include/vendor/libc",
+            "-I",
+            "include",
+            "-o",
+            "build/libbio/align.o",
+            "sys/libbio/align.c"
+        ],
+        "directory": "/home/nolln/root",
+        "file": "sys/libbio/align.c"
+    },
+    {
+        "arguments": [
+            "clang",
+            "-c",
+            "-g",
+            "-march=native",
+            "-ffast-math",
+            "-fno-strict-aliasing",
+            "-fwrapv",
+            "-fms-extensions",
+            "-Wno-microsoft-anon-tag",
+            "-Wno-incompatible-function-pointer-types",
+            "-isystem",
+            "include/vendor/libc",
+            "-I",
+            "include",
+            "-o",
+            "build/cmd/cat/cat.o",
+            "sys/cmd/cat/cat.c"
+        ],
+        "directory": "/home/nolln/root",
+        "file": "sys/cmd/cat/cat.c"
     }
 ]
\ No newline at end of file