diff options
| author | Nicholas Noll <nbnoll@eml.cc> | 2020-04-22 19:33:09 -0700 |
|---|---|---|
| committer | Nicholas Noll <nbnoll@eml.cc> | 2020-04-22 19:33:09 -0700 |
| commit | 18383b973877f4c30c878414a51c0b44ea5dafe4 (patch) | |
| tree | 811e7ccbdb9b0ba15b0ef95c8ab36502097abab2 /include/libbio.h | |
| parent | 9fb0a22dcb1ae04a1007316497fe6d11b91d8183 (diff) | |
feat: added generic interfaces for I/O
Diffstat (limited to 'include/libbio.h')
| -rw-r--r-- | include/libbio.h | 9 |
1 files changed, 9 insertions, 0 deletions
diff --git a/include/libbio.h b/include/libbio.h index 58540d4..9f54015 100644 --- a/include/libbio.h +++ b/include/libbio.h @@ -24,8 +24,17 @@ typedef struct bio·Tree bio·Node *root; } bio·Tree; +/* newick i/o */ bio·Tree bio·readnewick(Stream *file, mem·Allocator heap); error bio·writenewick(bio·Tree tree, Stream *out); // ----------------------------------------------------------------------- // Sequences + +typedef struct bio·FastaReader bio·FastaReader; + +/* fasta/q i/o */ +bio·Seq *bio·newfastareader(Stream *file, mem·Allocator heap); +bio·Seq *bio·readfasta(bio·FastaParser *p); +error bio·writefasta(bio·Seq *seq, Stream *out); + |