diff options
| author | Nicholas Noll <nbnoll@eml.cc> | 2020-04-28 11:59:59 -0700 |
|---|---|---|
| committer | Nicholas Noll <nbnoll@eml.cc> | 2020-04-28 11:59:59 -0700 |
| commit | 4eabf5d72c6b01bbf11180280ef9d28d5fe587bf (patch) | |
| tree | c113ac3eb4244564c90d8e22fe2da8cc0407949e /include/libbio.h | |
| parent | 8c8c6a9253ec2876f67217a8f10755b4ad7f3ec1 (diff) | |
feat: added number of nodes & leafs to tree data structure
Diffstat (limited to 'include/libbio.h')
| -rw-r--r-- | include/libbio.h | 16 |
1 files changed, 11 insertions, 5 deletions
diff --git a/include/libbio.h b/include/libbio.h index 0bda4d7..4b92587 100644 --- a/include/libbio.h +++ b/include/libbio.h @@ -12,21 +12,27 @@ typedef struct bio·Node int nchild; int ndescendent; struct bio·Node *parent; + // NOTE: Sibiling allows for polytomies struct bio·Node *child[2]; struct bio·Node *sibling; } bio·Node; -error phylo·addchild(bio·Node *parent, bio·Node* child); -bool phylo·isleaf(bio·Node *node); - typedef struct bio·Tree { bio·Node *root; + int nleaf; + int nnode; } bio·Tree; +// clade functions +error phylo·addchild(bio·Node* parent, bio·Node* child); + +error phylo·countnodes(bio·Node *node, int *n); +error phylo·countleafs(bio·Node *node, int *n); + /* newick i/o */ -bio·Tree bio·readnewick(io·Peeker stream, void*, mem·Allocator heap, void*); -error bio·writenewick(bio·Tree tree, io·Putter out, void*); +error bio·readnewick(io·Peeker stream, void*, mem·Allocator heap, void*, bio·Tree* tree); +error bio·writenewick(bio·Tree tree, io·Putter out, void*); // ----------------------------------------------------------------------- // Sequences |