diff options
| author | Nicholas Noll <nbnoll@eml.cc> | 2020-04-25 12:43:11 -0700 |
|---|---|---|
| committer | Nicholas Noll <nbnoll@eml.cc> | 2020-04-25 12:43:11 -0700 |
| commit | 622ec3cadbda926e02af594d2ff7e89d33833b36 (patch) | |
| tree | 3a7b7edba269688bb6c502d9bb8a6eb41cb13ca3 /include | |
| parent | 50081012e8dcf3c4ee4163526f684afa707c5a98 (diff) | |
chore: prepare for refactoring to allow for fastq
Diffstat (limited to 'include')
| -rw-r--r-- | include/libbio.h | 3 | ||||
| -rw-r--r-- | include/libn.h | 8 |
2 files changed, 6 insertions, 5 deletions
diff --git a/include/libbio.h b/include/libbio.h index 4c93656..40ff2f9 100644 --- a/include/libbio.h +++ b/include/libbio.h @@ -40,5 +40,6 @@ typedef struct bio·Seq byte *q; } bio·Seq; -bio·FastaReader *bio·newfastareader(io·Reader stream, void *s, mem·Allocator heap, void *h); +bio·FastaReader *bio·openfasta(io·Reader stream, void *s, mem·Allocator heap, void *h); error bio·readfasta(bio·FastaReader *rdr, bio·Seq *seq); +error bio·closefasta(bio·FastaReader *rdr); diff --git a/include/libn.h b/include/libn.h index 99e4fdb..bfeae3e 100644 --- a/include/libn.h +++ b/include/libn.h @@ -117,9 +117,9 @@ typedef struct stat io·Stat; enum SeekPos { - seek·CUR = SEEK_CUR, - seek·SET = SEEK_SET, - seek·END = SEEK_END + seek·cur = SEEK_CUR, + seek·set = SEEK_SET, + seek·end = SEEK_END }; Stream *io·open(byte *name, byte *mode); @@ -134,7 +134,7 @@ error io·putbyte(Stream *s, byte c); int io·putstring(Stream *s, string str); int io·write(Stream *s, int sz, int n, void *buf); int io·flush(Stream *s); -int io·seek(Stream *s, long off, enum SeekPos origin); +int io·seek(Stream *s, long off, enum SeekPos whence); /* generic I/O interfaces */ |