feat(huge): huge refactor (in progress).

Commented out libc includes to uncover all explicit dependencies.
A large fraction has now been ported over (no testing).
I did not port over the command line tools, such as the rc shell.
These will be done independently - as of now I just want the library to
stand independent.

Compilation currently fails due to the lack of math functions.

1 files changed, 4 insertions, 5 deletions

diff --git a/src/libbio/fasta.c b/src/libbio/fasta.c
index eb0d090..e6f0dd3 100644
--- a/src/libbio/fasta.c
+++ b/src/libbio/fasta.c
@@ -45,7 +45,7 @@ grow(struct SeqBuf **sb, int min)
         return 1;
     }
 
-    memcpy(new, old, sizeof(*new) + (*sb)->cap);
+    mem·copy(new, sizeof(*new) + (*sb)->cap, old);
 
     new->cap = newcap;
     new->it  = new->b + (old->it - old->b); 
@@ -96,7 +96,7 @@ push(struct SeqBuf **sb, int n, void *buf)
     }
     seq = *sb;
 
-    memcpy(seq->it, buf, n);
+    mem·copy(seq->it, n, buf);
     seq->it += n;
 
     return 0;
@@ -184,8 +184,7 @@ bio·closeseq(bio·SeqReader *rdr)
 }
 
 
-static
-int
+static int
 readfasta(bio·SeqReader *rdr, bio·Seq *seq, byte hdr, byte stop)
 {
     int  err;
@@ -375,7 +374,7 @@ bio·writefasta(io·Writer io, void *wtr, bio·Seq seq)
             b = buf;
         }
         *b++ = '\n';
-        memcpy(b, seq.s+i, d);
+        mem·copy(b, d, seq.s+i);
         b += d;
     }