feat(huge): huge refactor (in progress).

Commented out libc includes to uncover all explicit dependencies.
A large fraction has now been ported over (no testing).
I did not port over the command line tools, such as the rc shell.
These will be done independently - as of now I just want the library to
stand independent.

Compilation currently fails due to the lack of math functions.

1 files changed, 8 insertions, 8 deletions

diff --git a/src/libbio/newick.c b/src/libbio/newick.c
index a855cea..a555379 100644
--- a/src/libbio/newick.c
+++ b/src/libbio/newick.c
@@ -50,8 +50,8 @@ tokstr(struct Token tok)
        case tok·comma:  return ",";
        case tok·semi:   return ";";
        case tok·colon:  return ":";
-       case tok·number: 
-            snprintf(b, arrlen(b), "%f", tok.lit.x);
+       case tok·number:
+            fmt·nsprint(b, arrlen(b), "%f", tok.lit.x);
             return b;
         default:
             return nil;
@@ -80,8 +80,8 @@ lex(io·Peeker s, void* fp)
     c  = b;
     *c = s.get(fp);
 
-    if (isspace(*c)) {
-        while (isspace(*c)) {
+    if(utf8·isspace(*c)){
+        while(utf8·isspace(*c)){
             *(++c) = s.get(fp);
         }
 
@@ -107,7 +107,7 @@ lex(io·Peeker s, void* fp)
     case '.':
     case '0': case '1': case '2': case '3': case '4':
     case '5': case '6': case '7': case '8': case '9':
-        while (isdigit(*c)) {
+        while(utf8·isdigit(*c)){
     NUM:    *(++c) = s.get(fp);
         }
         if (*c == '.')          goto NUM;
@@ -194,7 +194,7 @@ parse(struct Parser *p)
             }
 
             node = p->mem.alloc(p->heap, 1, sizeof(*node));
-            memset(node, 0, sizeof(*node));
+            mem·set(node, sizeof(*node), 0);
 
             if (p->root) {
                 phylo·addchild(p->root, node);
@@ -281,7 +281,7 @@ parse(struct Parser *p)
                 }
 
                 node = p->mem.alloc(p->heap, 1, sizeof(*node));
-                memset(node, 0, sizeof(*node));
+                mem·set(node, sizeof(*node), 0);
 
                 node->name = string·make(tok.lit.s);
 
@@ -396,7 +396,7 @@ dump(bio·Node *node, void *impl, io·Putter out)
 
     if (node->parent) {
         out.put(impl, ':');
-        snprintf(b, arrlen(b), "%f", node->dist);
+        fmt·nsprint(b, arrlen(b), "%f", node->dist);
         out.puts(impl, b);
     }