aboutsummaryrefslogtreecommitdiff
path: root/include/libbio.h
diff options
context:
space:
mode:
Diffstat (limited to 'include/libbio.h')
-rw-r--r--include/libbio.h29
1 files changed, 29 insertions, 0 deletions
diff --git a/include/libbio.h b/include/libbio.h
new file mode 100644
index 0000000..d8430b3
--- /dev/null
+++ b/include/libbio.h
@@ -0,0 +1,29 @@
+#pragma once
+
+// -----------------------------------------------------------------------
+// Phylogenetics
+
+typedef struct bio·Node
+{
+ string name;
+ string comment;
+ double dist;
+ double support;
+ int nchild;
+ int ndescendent;
+ struct bio·Node *parent;
+ struct bio·Node *child[2];
+ struct bio·Node *sibling;
+} bio·Node;
+
+error phylo·addchild(bio·Node* parent, bio·Node* child);
+
+typedef struct bio·Tree
+{
+ bio·Node *root;
+} bio·Tree;
+
+bio·Tree bio·readnewick(Stream *file, mem·Allocator heap);
+
+// -----------------------------------------------------------------------
+// Sequences