aboutsummaryrefslogtreecommitdiff
path: root/sys/libbio/io/fasta.c
diff options
context:
space:
mode:
Diffstat (limited to 'sys/libbio/io/fasta.c')
-rw-r--r--sys/libbio/io/fasta.c28
1 files changed, 25 insertions, 3 deletions
diff --git a/sys/libbio/io/fasta.c b/sys/libbio/io/fasta.c
index 891e222..5e659ab 100644
--- a/sys/libbio/io/fasta.c
+++ b/sys/libbio/io/fasta.c
@@ -132,15 +132,18 @@ fill(bio·FastaReader *rdr)
return 0;
}
+// -----------------------------------------------------------------------
+// Fasta files
+
bio·FastaReader*
-bio·newfastareader(io·Reader stream, void *s, mem·Allocator heap, void *h)
+bio·openfasta(io·Reader file, void *f, mem·Allocator heap, void *h)
{
error err;
bio·FastaReader *rdr;
rdr = heap.alloc(h, 1, sizeof(bio·FastaReader));
- rdr->file = stream;
- rdr->f = s;
+ rdr->file = file;
+ rdr->f = f;
rdr->eof = 0;
rdr->seq = heap.alloc(h, 1, sizeof(*rdr->seq) + INIT_NM_SIZE + INIT_SQ_SIZE);
@@ -236,3 +239,22 @@ SUCCESS:
return 0;
}
+
+error
+bio·closefasta(bio·FastaReader *rdr)
+{
+ mem·Allocator heap;
+ void *h;
+
+
+ heap = rdr->seq->heap;
+ h = rdr->seq->h;
+
+ heap.free(h, rdr->seq);
+ heap.free(h, rdr);
+
+ return 0;
+}
+
+// -----------------------------------------------------------------------
+// Fastq files