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Completes the port to our standard library (up to malloc).
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Commented out libc includes to uncover all explicit dependencies.
A large fraction has now been ported over (no testing).
I did not port over the command line tools, such as the rc shell.
These will be done independently - as of now I just want the library to
stand independent.
Compilation currently fails due to the lack of math functions.
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The old methods were simple wrappers of C standard library functions.
We've moved (painfully) over to a new interface that allows for files to
live on the stack. All users of the functionality are ported over.
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Also updated libraries in makefiles that were deprecated.
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