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2020-05-09
fix: mathematical bug in rotm.
Nicholas Noll
also generalized to allow for non unity increments
2020-05-08
Adding strided computation to blas kernels.
Nicholas Noll
I started implementing LQ factorization and immediately realized I needed strided views. For simplicity, I will just implement them in the most portable, C native way (no vectorization). Speed can come later.
2020-05-08
added more level 2 and 3 functions to blas implementation
Nicholas Noll
2020-05-08
Prototype of BLAS level 1 functions (double)
Nicholas Noll
Functions run at ~90% of the speed of tested OpenBLAS functions
2020-05-07
wrap: elementary math functions for libmath
Nicholas Noll
2020-05-06
bump
Nicholas Noll
2020-05-03
removed the day's confusion. added debug and release mode to makefile
Nicholas Noll
2020-05-03
added simple random number generator: NOT CRYTOGRAPHIC
Nicholas Noll
2020-05-03
removed buggy qsort header and implemented myself
Nicholas Noll
2020-05-01
moved to static build with musl and integrated cscopes into dev tools
Nicholas Noll
2020-05-01
feat: level 3 funcs
Nicholas Noll
2020-04-30
feat: added more level 2 functions
Nicholas Noll
2020-04-30
chore: broke out blas-like interface into its own file
Nicholas Noll
2020-04-30
explore: testing out simple vectorized math library
Nicholas Noll
2020-04-30
chore: move from new to make prefix of constructors
Nicholas Noll
2020-04-28
struct: preparing for prototype of math library
Nicholas Noll
2020-04-28
feat: prototype of rerooting function
Nicholas Noll
2020-04-28
fix: finished remove child function
Nicholas Noll
2020-04-28
fix: moved nnodes into a property of node
Nicholas Noll
2020-04-28
fix: ladderize now sorts by number of nodes contained below
Nicholas Noll
2020-04-28
struct: tree node children now purely linked list instead of bespoke hybrid
Nicholas Noll
2020-04-28
feat: prototype of remove child function
Nicholas Noll
2020-04-28
fix: allow for quoted identifiers to contain any character
Nicholas Noll
2020-04-28
fix: allow for identifiers that start with numbers
Nicholas Noll
2020-04-28
feat: added number of nodes & leafs to tree data structure
Nicholas Noll
2020-04-26
fix: now properly sort arrays with inline functions
Nicholas Noll
2020-04-26
feat: begun work on edit distance aware local sensitive hashing algorithm
Nicholas Noll
2020-04-26
feat: added simple sort interfaces to libn
Nicholas Noll
2020-04-26
sys/libn/sort.c
Nicholas Noll
2020-04-26
chore: moved string into main libn header
Nicholas Noll
2020-04-25
feat: parsing multiline fastq files
Nicholas Noll
2020-04-25
chore: pulled out sequence header function to be used by fastq
Nicholas Noll
2020-04-25
chore: prepare for refactoring to allow for fastq
Nicholas Noll
2020-04-25
feat: added memory mapped file reader
Nicholas Noll
2020-04-25
feat: updated fasta code to allow for iteration
Nicholas Noll
2020-04-23
fix: gzip macro error
Nicholas Noll
2020-04-23
feat: started prototype of zlib wrapper
Nicholas Noll
2020-04-23
feat: made calling signature of interface accepting functions more reliable
Nicholas Noll
2020-04-22
fix: double free problem
Nicholas Noll
2020-04-22
feat: interfaces of newick io more general. can now take arbitrary ↵
Nicholas Noll
readers/writers
2020-04-22
feat: added generic interfaces for I/O
Nicholas Noll
2020-04-22
fix: moved byte buffer to static storage so you don't read off stale stack
Nicholas Noll
2020-04-22
fix: bug squashing with newick parser
Nicholas Noll
2020-04-21
feat: added skeleton of biological library
Nicholas Noll
2020-04-21
chore: updating naming conventions
Nicholas Noll
2020-04-21
fix: updated make rules to output sensible name
Nicholas Noll
2020-04-21
feat: added simple memory arena allocator to libn
Nicholas Noll
2020-04-21
feat: added allocator interface to allow for flexible library interfaces
Nicholas Noll
2020-04-21
chore: updated make rules to not link all made libraries
Nicholas Noll
2020-04-21
feat: added wrapper for io
Nicholas Noll
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