From 36117f59ec77784c9ef77801d7c1cbf03a4c4a8b Mon Sep 17 00:00:00 2001
From: Nicholas Noll <nbnoll@eml.cc>
Date: Thu, 7 May 2020 15:35:06 -0700
Subject: wrap: elementary math functions for libmath

---
 compile_commands.json | 170 ++++++++++++++++++++++++++++----------------------
 1 file changed, 97 insertions(+), 73 deletions(-)

(limited to 'compile_commands.json')

diff --git a/compile_commands.json b/compile_commands.json
index acb788e..cbb7712 100644
--- a/compile_commands.json
+++ b/compile_commands.json
@@ -11,19 +11,16 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
-            "-ffreestanding",
-            "-fno-builtin",
-            "-nostdlib",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libc/string.o",
-            "sys/libc/string.c"
+            "build/libn/coro.o",
+            "sys/libn/coro.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libc/string.c"
+        "file": "sys/libn/coro.c"
     },
     {
         "arguments": [
@@ -42,11 +39,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/bufio.o",
-            "sys/libn/bufio.c"
+            "build/libn/memory.o",
+            "sys/libn/memory.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/bufio.c"
+        "file": "sys/libn/memory.c"
     },
     {
         "arguments": [
@@ -60,16 +57,19 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
+            "-ffreestanding",
+            "-fno-builtin",
+            "-nostdlib",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libbio/phylo.o",
-            "sys/libbio/phylo.c"
+            "build/libc/string.o",
+            "sys/libc/string.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/phylo.c"
+        "file": "sys/libc/string.c"
     },
     {
         "arguments": [
@@ -83,16 +83,17 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
+            "-D_GNU_SOURCE",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libn/flate.o",
-            "sys/libn/flate.c"
+            "build/libmath/lapack.o",
+            "sys/libmath/lapack.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/flate.c"
+        "file": "sys/libmath/lapack.c"
     },
     {
         "arguments": [
@@ -111,11 +112,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/sort.o",
-            "sys/libn/sort.c"
+            "build/libn/random.o",
+            "sys/libn/random.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/sort.c"
+        "file": "sys/libn/random.c"
     },
     {
         "arguments": [
@@ -134,11 +135,11 @@
             "-I",
             "include",
             "-o",
-            "build/libbio/test.o",
-            "sys/libbio/test.c"
+            "build/libn/test.o",
+            "sys/libn/test.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/test.c"
+        "file": "sys/libn/test.c"
     },
     {
         "arguments": [
@@ -152,16 +153,17 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
+            "-D_GNU_SOURCE",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libbio/align.o",
-            "sys/libbio/align.c"
+            "build/libmath/blas.o",
+            "sys/libmath/blas.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/align.c"
+        "file": "sys/libmath/blas.c"
     },
     {
         "arguments": [
@@ -181,11 +183,11 @@
             "-I",
             "include",
             "-o",
-            "build/libmath/blas.o",
-            "sys/libmath/blas.c"
+            "build/libmath/test.o",
+            "sys/libmath/test.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libmath/blas.c"
+        "file": "sys/libmath/test.c"
     },
     {
         "arguments": [
@@ -204,11 +206,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/memory.o",
-            "sys/libn/memory.c"
+            "build/libbio/test.o",
+            "sys/libbio/test.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/memory.c"
+        "file": "sys/libbio/test.c"
     },
     {
         "arguments": [
@@ -227,11 +229,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/mmap.o",
-            "sys/libn/mmap.c"
+            "build/libn/io.o",
+            "sys/libn/io.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/mmap.c"
+        "file": "sys/libn/io.c"
     },
     {
         "arguments": [
@@ -250,11 +252,11 @@
             "-I",
             "include",
             "-o",
-            "build/libbio/io/fasta.o",
-            "sys/libbio/io/fasta.c"
+            "build/libbio/phylo.o",
+            "sys/libbio/phylo.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/io/fasta.c"
+        "file": "sys/libbio/phylo.c"
     },
     {
         "arguments": [
@@ -273,11 +275,11 @@
             "-I",
             "include",
             "-o",
-            "build/libbio/simulate.o",
-            "sys/libbio/simulate.c"
+            "build/libn/sort.o",
+            "sys/libn/sort.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/simulate.c"
+        "file": "sys/libn/sort.c"
     },
     {
         "arguments": [
@@ -291,16 +293,19 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
+            "-ffreestanding",
+            "-fno-builtin",
+            "-nostdlib",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libn/random.o",
-            "sys/libn/random.c"
+            "build/libc/stdio.o",
+            "sys/libc/stdio.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/random.c"
+        "file": "sys/libc/stdio.c"
     },
     {
         "arguments": [
@@ -314,17 +319,16 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
-            "-D_GNU_SOURCE",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libmath/test.o",
-            "sys/libmath/test.c"
+            "build/libn/gz.o",
+            "sys/libn/gz.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libmath/test.c"
+        "file": "sys/libn/gz.c"
     },
     {
         "arguments": [
@@ -343,11 +347,11 @@
             "-I",
             "include",
             "-o",
-            "build/libbio/io/newick.o",
-            "sys/libbio/io/newick.c"
+            "build/libn/error.o",
+            "sys/libn/error.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libbio/io/newick.c"
+        "file": "sys/libn/error.c"
     },
     {
         "arguments": [
@@ -366,11 +370,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/string.o",
-            "sys/libn/string.c"
+            "build/libn/bufio.o",
+            "sys/libn/bufio.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/string.c"
+        "file": "sys/libn/bufio.c"
     },
     {
         "arguments": [
@@ -384,19 +388,16 @@
             "-fms-extensions",
             "-Wno-microsoft-anon-tag",
             "-Wno-incompatible-function-pointer-types",
-            "-ffreestanding",
-            "-fno-builtin",
-            "-nostdlib",
             "-isystem",
             "include/vendor/libc",
             "-I",
             "include",
             "-o",
-            "build/libc/stdio.o",
-            "sys/libc/stdio.c"
+            "build/libbio/align.o",
+            "sys/libbio/align.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libc/stdio.c"
+        "file": "sys/libbio/align.c"
     },
     {
         "arguments": [
@@ -415,11 +416,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/test.o",
-            "sys/libn/test.c"
+            "build/libbio/io/newick.o",
+            "sys/libbio/io/newick.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/test.c"
+        "file": "sys/libbio/io/newick.c"
     },
     {
         "arguments": [
@@ -438,11 +439,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/gz.o",
-            "sys/libn/gz.c"
+            "build/libn/mmap.o",
+            "sys/libn/mmap.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/gz.c"
+        "file": "sys/libn/mmap.c"
     },
     {
         "arguments": [
@@ -461,11 +462,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/coro.o",
-            "sys/libn/coro.c"
+            "build/libn/flate.o",
+            "sys/libn/flate.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/coro.c"
+        "file": "sys/libn/flate.c"
     },
     {
         "arguments": [
@@ -484,11 +485,11 @@
             "-I",
             "include",
             "-o",
-            "build/libn/io.o",
-            "sys/libn/io.c"
+            "build/libbio/io/fasta.o",
+            "sys/libbio/io/fasta.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/io.c"
+        "file": "sys/libbio/io/fasta.c"
     },
     {
         "arguments": [
@@ -507,10 +508,33 @@
             "-I",
             "include",
             "-o",
-            "build/libn/error.o",
-            "sys/libn/error.c"
+            "build/libbio/simulate.o",
+            "sys/libbio/simulate.c"
         ],
         "directory": "/home/nolln/root",
-        "file": "sys/libn/error.c"
+        "file": "sys/libbio/simulate.c"
+    },
+    {
+        "arguments": [
+            "clang",
+            "-c",
+            "-g",
+            "-march=native",
+            "-ffast-math",
+            "-fno-strict-aliasing",
+            "-fwrapv",
+            "-fms-extensions",
+            "-Wno-microsoft-anon-tag",
+            "-Wno-incompatible-function-pointer-types",
+            "-isystem",
+            "include/vendor/libc",
+            "-I",
+            "include",
+            "-o",
+            "build/libn/string.o",
+            "sys/libn/string.c"
+        ],
+        "directory": "/home/nolln/root",
+        "file": "sys/libn/string.c"
     }
 ]
\ No newline at end of file
-- 
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