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#pragma once
// -----------------------------------------------------------------------
// Phylogenetics
typedef struct bio·Node
{
string name;
string comment;
double dist;
double support;
int nchild;
int ndescendent;
struct bio·Node *parent;
struct bio·Node *child[2];
struct bio·Node *sibling;
} bio·Node;
error phylo·addchild(bio·Node *parent, bio·Node* child);
bool phylo·isleaf(bio·Node *node);
typedef struct bio·Tree
{
bio·Node *root;
} bio·Tree;
/* newick i/o */
bio·Tree bio·readnewick(Stream *file, mem·Allocator heap);
error bio·writenewick(bio·Tree tree, Stream *out);
// -----------------------------------------------------------------------
// Sequences
typedef struct bio·FastaReader bio·FastaReader;
/* fasta/q i/o */
bio·Seq *bio·newfastareader(Stream *file, mem·Allocator heap);
bio·Seq *bio·readfasta(bio·FastaParser *p);
error bio·writefasta(bio·Seq *seq, Stream *out);
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