diff options
| author | Nicholas Noll <nbnoll@eml.cc> | 2020-08-19 08:44:51 -0700 |
|---|---|---|
| committer | Nicholas Noll <nbnoll@eml.cc> | 2020-08-19 08:44:51 -0700 |
| commit | bd21a4412a3e35f32ad84cf19328b7c89e0ed6e5 (patch) | |
| tree | 52e434afe51f6b153ba0aed6a9f4746614853264 | |
| parent | 9fa0dc81e1a6162736fbefe7ffffde79f9f808ce (diff) | |
chore: update makefile to redirect to correct targets
| -rw-r--r-- | Makefile | 2 | ||||
| -rw-r--r-- | pangraph/graph.py | 2 |
2 files changed, 2 insertions, 2 deletions
@@ -55,7 +55,7 @@ staph: @echo "cluster staph"; \ pangraph cluster -d data/staph data/staph/assemblies/*.fna.gz @echo "build staph"; \ - pangraph build -d data/staph -m 500 -b 0 data/staph/guide.json #1>staph.log + pangraph build -d data/staph -m 500 -b 0 data/staph/guide.json 1>staph.log 2>/dev/null # figures diff --git a/pangraph/graph.py b/pangraph/graph.py index 2f6572a..1a67c16 100644 --- a/pangraph/graph.py +++ b/pangraph/graph.py @@ -524,7 +524,7 @@ class Graph(object): shell=True) out, err = proc.communicate() tree = Phylo.read(io.StringIO(out.decode('utf-8')), format='newick') - print(f"-> {n} SCORE: {tree.total_branch_length()/(2*{num_seqs})}") + print(f"-> {n} SCORE: {tree.total_branch_length()/(2*num_seqs)}") make_tree(0) make_tree(1) |