1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
|
from pathlib import Path
import setuptools
import sys
min_version = (3, 6)
if sys.version_info < min_version:
error = """
Python {0} or above is required.
This may be due to an out of date pip.
Make sure you have pip >= 9.0.1.
""".format('.'.join(str(n) for n in min_version)),
sys.exit(error)
base_dir = Path(__file__).parent.resolve()
version_file = base_dir / "pangraph/__version__.py"
readme_file = base_dir / "README.md"
# Eval the version file to get __version__; avoids importing our own package
with version_file.open() as f:
exec(f.read())
setuptools.setup(
name = "pangraph",
version = __version__,
author = "Pangraph developers",
author_email = "nbnoll@eml.cc, richard.neher@unibas.ch",
description = "A bioinformatics toolkit for pangenomic analysis",
keywords = "pangraph, molecular epidemiology",
url = "https://github.com/nnoll/pangraph",
project_urls = {
"Bug Reports": "https://github.com/nnoll/pangraph/issues",
"Source": "https://github.com/nnoll/pangraph",
},
packages = setuptools.find_packages(),
package_data = {'pangraph': ['data/*']},
data_files = [("", ["LICENSE"])],
python_requires = f">={min_version[0]}.{min_version[1]}",
install_requires = [
"numpy",
"biopython",
"portion",
"scikit-bio",
"cigar",
"suffix-tree",
],
extras_require = {
'dev': [
"ipython",
"matplotlib",
"ipdb",
],
},
classifiers = [
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
],
entry_points = {
"console_scripts": [
"pangraph = pangraph.__main__:main",
]
}
)
|
