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# housekeeping
.PHONY: all archive clean documentation
.SUFFIXES:
.SECONDARY:
# variables
DATA=$(HOME)/root/data/seqspace
MODELS=
NORMED=
DIRECTORIES=\
drosophila
# commands
JULIA = julia --project=.
NORMALIZE = @echo ">generating $(@:$(DATA)/%=%)";\
$(JULIA) bin/normalize.jl
FITMODEL = @echo ">generating $(@:$(DATA)/%=%)";\
$(JULIA) bin/fitmodel.jl
# recipe template
define RULE
$(DATA)/$(DIR)/model/norms.jld2: param/$(DIR)/normalize.jl $(shell find $(DATA)/$(DIR)/raw -type f)
$$(NORMALIZE) -o $$@ -p $$< $(DATA)/$(DIR)/raw
$(DATA)/$(DIR)/model/model.jld2: param/$(DIR)/model.jl $(DATA)/$(DIR)/model/norms.jld2
$$(FITMODEL) -o $$@ -p $$^
MODELS+=$(DATA)/$(DIR)/model/model.jld2
NORMED+=$(DATA)/$(DIR)/model/norms.jld2
endef
all: models
# generate individual data rules
data.mk: Makefile
$(file > $@,) $(foreach DIR,$(DIRECTORIES),$(file >> $@,$(RULE)) )
-include data.mk
normed: $(NORMED)
models: $(MODELS)
archive:
@echo ">archiving current models";\
$(JULIA) bin/archive.jl $(DATA) $(DIRECTORIES)
documentation:
cd docs && $(JULIA). make.jl
# TODO: clean up figures
clean:
@echo ">removing models";\
rm -f $(NORMED) $(MODELS)
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