diff options
author | Nicholas Noll <nbnoll@eml.cc> | 2020-04-25 11:38:29 -0700 |
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committer | Nicholas Noll <nbnoll@eml.cc> | 2020-04-25 11:38:29 -0700 |
commit | 788ddbd8e113cd4f9694aee779c5b5dcca26e30b (patch) | |
tree | 32e2db53cf5cd3fb907e6b17ab9ef6bdab8d9f4c /include/libbio.h | |
parent | 1f166f0a4ed9ed32ade1ed21a571c9b2d0171ebc (diff) |
feat: updated fasta code to allow for iteration
Diffstat (limited to 'include/libbio.h')
-rw-r--r-- | include/libbio.h | 17 |
1 files changed, 10 insertions, 7 deletions
diff --git a/include/libbio.h b/include/libbio.h index 2dc3d45..4c93656 100644 --- a/include/libbio.h +++ b/include/libbio.h @@ -31,11 +31,14 @@ error bio·writenewick(bio·Tree tree, io·Putter out, void*); // ----------------------------------------------------------------------- // Sequences -#if 0 typedef struct bio·FastaReader bio·FastaReader; - -/* fasta/q i/o */ -bio·Seq *bio·newfastareader(Stream *file, mem·Allocator heap); -bio·Seq *bio·readfasta(bio·FastaParser *p); -error bio·writefasta(bio·Seq *seq, Stream *out); -#endif +typedef struct bio·Seq +{ + int len; + byte *name; + byte *s; + byte *q; +} bio·Seq; + +bio·FastaReader *bio·newfastareader(io·Reader stream, void *s, mem·Allocator heap, void *h); +error bio·readfasta(bio·FastaReader *rdr, bio·Seq *seq); |